The study, by a team from the University of Leeds’ Astbury Centre for Structural Molecular Biology and the John Innes Centre in Norwich, describes the structure of an empty version of Cowpea Mosaic Virus (CPMV) and the molecular “glue” that allows the virus to build itself and encapsulate its genome.
The findings, published in the journal Nature Communications and based on revolutionary new electron microscopy, may be a crucial step to eventually allowing scientists to build custom versions of the virus that can carry medicines into the body and target disease.
Lead author Dr Neil Ranson, Associate Professor of Structural Molecular Biology at the University of Leeds, said: “To use Cowpea Mosaic Virus as a drug delivery vehicle, we need to understand how it puts itself together, and to do that we need to understand its structure in solution in very fine detail.
“Just a couple of years ago, that was impossible because we simply couldn’t see complex biological systems in the detail required. A new generation of electron microscopes, however, is revolutionising our ability to peer into the virus’ inner workings and understand how we might make it work for us.”
The Nature Communications paper investigates vital steps to understanding how safe, plant-based virus-like particles could be created in the future.
Dr Ranson said: “The aim of our project is to understand how the virus can put itself together from very simple building blocks. If we understand that properly, we may be able to efficiently make the virus package drugs, and then target them towards specific places or diseases in the human body, such as cancer cells.
“Plant viruses are ideal for such work – they are a huge evolutionary distance from us. You can’t catch plant viruses. Our paper shows the structure of the empty virus shell in unprecedented detail, including a part of the protein that is essential for assembly but has never been seen before. The virus-like particles, which were made by our collaborators at the John Innes Centre in Norwich, have no genome and therefore no ability to reproduce themselves or mutate,” Dr Ranson said.
“We are left with elegant, highly efficient and stable structures that have evolved to a level of perfection that it is currently impossible for man-made designs to rival, and these could be a major asset in developing targeted medicines. We could in the future change the sequences on their protein shells and retarget them at the diseases we want to hit.”
The paper is a product of a revolution in electron microscopy—dubbed the “resolution revolution”—that is transforming the level of detail at which structural biologists can work. It includes some of the most detailed electron microscope structures of protein complexes yet published, and these form the basis of a detailed analysis of how the CPMV virus builds itself.
The researchers show how the virus constructs a highly symmetrical, protein shell from five-sided “pentons” each built from five copies of a protein subunit. At the heart of the assembly process is a segment of a key protein – the C-terminus of the small coat protein subunit – that acts as a dab of molecular glue to hold the pentons together as the virus’ outer structure is built.
The C-terminus is also essential for the virus to package its genes, but it is cleaved from the virus when it has done its job. This has made it impossible to observe using other structural techniques such as x-ray crystallography.
Dr Emma Hesketh, a University of Leeds Research Fellow and the first author of the paper in Nature Communications, said: “The basic unit is very simple, so the virus only needs a very small amount of information to make a large protein shell. Not only is it very efficient but CPMV is known for building a very stable structure that doesn’t break down easily. We need that stability if these structures are going to survive drug manufacture and be introduced into the human body.”
“The new electron microscopes used in this study allowed us to see the segment in detail and understand its real role,” Dr Hesketh said.
The team used new-generation 300-kilovolt electron microscopes equipped with direct electron-detecting cameras at the Medical Research Council (MRC) Laboratory of Molecular Biology in Cambridge. The microscopes are capable of more than 130,000-times magnification. Two of the latest generation of this type of electron microscope are part of a £17 million investment in the new Astbury Biostructure Laboratory and are due to be installed at the University of Leeds next year.
“This equipment is completely transforming the level of detail at which we can interact with molecules. The new microscopes have more power but are also more stable and have sensors that directly detect the electron beam, rather than indirectly detecting it with optical sensors as the previous generation did.
“In practice, that means that, for the first time, we are looking in atomic detail at the individual amino acids in complex biological systems. This opens the way to manipulating those amino acids and intervening in the function of molecules with unprecedented precision.”
The research was funded by the Biotechnology and Biological Sciences Research Council (BBSRC) as part of the project entitled “Untangling the processes of replication and encapsidation in Picornavirales” led by Prof. George Lomonossoff at the John Innes Centre.
Helen Miller, Innovate UK (Apr 2018), £999,960
Elisabetta Groppelli, David Rowlands & Stanley Lemon (University of North Carolina), Medical Research Foundation Fellowship (Apr 2018), £293,494
Nikesh Patel, Medical Research Foundation fellowship (Apr 2018), £290,976
Jessica Kwok & Ralf Richter, Leverhulme Trust (Apr 2018), £298,273
Julie Aspden, Royal Society (Apr 2018), £20,000
Liz Duncan, Royal Society (Mar 2018), £14,602
Alex O'Neill & Ryan Seipke, BBSRC (Feb 2018), £45,489
Jim Deuchars, Royal Society (Feb 2018), £16,300
Stefan Kepinski & Netta Cohen, Leverhulme Trust (Feb 2018), £320,387
Lisa Collins, BBSRC (Feb 2018), £49,950
Lars Jeuken, BBSRC (Feb 2018), £30,000
Nikita Gamper, BBSRC (Feb 2018), £30,000
Alison Baker, BBSRC (Feb 2018), £30,000
Scott Bowen, Leducq Foundation Grant (Feb 2018), £28,470
Jessica Kwok and Ronaldo Ichiyama, International Spinal Research Trust (Feb 2018), £94,450
Alex O'Neill, Oxford Drug Design (Jan 2018), £86,098
Dave Lewis and Colleagues in South Africa, HEFCE Global Challenge Research (Jan 2018), £48,000
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Graham Askew, Simon Walker, BBSRC (Jan 2018), £699,781
Jennifer Tomlinson, Royal Society (Jan 2018), £512,801
Alison Dunn, NERC (Dec 2017), £18,000
Jennifer Tomlinson, Royal Society-Research Fellows Enhancement Award (Dec 2017), £94,681
Helen Miller, AB AGri Grant (Dec 2017), £73,600
Simon Walker, Royal Society Enhancement Award (Dec 2017), £10,000
Carrie Ferguson, Bryan Taylor, Harry Rossiter, The Physiological Society (Dec 2017), £7,392
Ralf Richter, Royal Society (Dec 2017), £6,000
Christine Foyer, British Council Newton Fund (Dec 2017), £49,840
Adrian Whitehouse and colleagues in School of Chemistry and University of Liverpool, MRC (Nov 2017), £622,319
Michelle Peckham, Neil Ransom, MRC (Nov 2017), £495,159
Dave Lewis, British Council India (Nov 2017), £22,540
Elton Zeqiraj, Royal Society (Nov 2017), £15,000
Hannah Dugdale, Royal Society (Nov 2017), £15,000
Shaunna Burke, Cancer Research UK Innovation Grant (Nov 2017), £20,000
Alex O'Neill and colleagues in Chemistry, BBSRC (Nov 2017), £431,865
Jessica Kwok, Wings for Life (Nov 2017), £87,365
Tom Bennett, BBSRC (Oct 2017), £523,679
Neil Ranson, Darren Tomlinson, BBSRC (Oct 2017), £494,318
Nikita Gamper, BBSRC (Oct 2017), £490,426
Amanda Bretman and colleagues from UEA, NERC (Oct 2017), £430,886
Juan Fontana, Rosetrees Trust consumables grant (Oct 2017), £22,500
Helen Miller, DSM Nutritional Products AG (Sep 2017), £69,988
Neil Ranson, Juan Fontana, Mark Harris, Michelle Peckham, Ralf Richter, Peter Stockley, Patricija Van Oosten-Hawle and colleagues in Engineering, FMH and MAPS, Wellcome Trust Equipment Call (Sep 2017), £418,000
Jamie Johnston, Physiological Society (Sep 2017), £10,000
Frank Sobott, Adrian Goldman, Mark Harris, Andrew Macdonald, Stephen Muench, Sheena Radford and colleagues in FMH and MAPS, Wellcome Trust Equipment Call (Aug 2017), £415,000
Ralf Richter, David Brockwell, Eric Hewitt, Jessica Kwok, Emanuele Paci and MAPS/FMH, BBSRC (Jun 2017), £600,000
Eric Blair, Adrian Whitehouse, Nicola Stonehouse, Alison Baker, Richard Bayliss, Joan Boyes, Ryan Seipke, Sally Boxall and MAPS/FMH, BBSRC (Jun 2017), £376,000
Stefan Kepinski, Yoselin Benitez-Alfonso, Tom Bennett, Michelle Peckham, BBSRC (Jun 2017), £331,000
Roman Tuma, Lars Jeuken, Paul Millner, Sheena Radford, Peter Stockley and MAPS/FMH, BBSRC (Jun 2017), £222,000
Vas Ponnambalam, Darren Tomlinson, Stephen Wheatcroft, BHF (May 2017), £107,878